Miscellaneous

• Selecting files in SPM
  • Using regular expressions to filter files
  • Recursive file selection
  • Selecting volumes from 4d files in SPM
• Using SPM’s Display tool
  • Selecting and displaying an image
  • Using Display to reorient an image
  • Reorienting multiple images
  • Other display tools
• Using SPM’s CheckReg Tool
  • Using CheckReg to check coregistration of mean functional and structural
  • Image information available from CheckReg
  • Using CheckReg to check normalization to MNI space
  • Displaying volumes from 4d files
• Creating an explicit mask
• Spatially restricting analyses
  • Using a an explicit mask to constrain voxelwise analysis
  • Conducting a region of interest (ROI) analysis
  • Supplementing restricted analyses with whole-brain analyses
  • Avoiding nonindependence and circularity
• Viewing or changing SPM Defaults
  • Editing spm_defaults.m
  • Creating a custom version of spm_defaults.m
  • Changing default values from the Matlab command line
• Building ROIs in MarsBaR
  • Downloading and installing MarsBaR
  • Defining a (spherical) ROI
  • Creating an image ROI
  • Viewing a MarsBaR (.mat) ROI
  • Viewing an image ROI
  • Using a script to create ROIs
• Frequently Asked Questions
  • Why won’t my structural image segment properly?
  • Why is voxelwise FDR correction not available in SPM8, like it was in SPM5?
  • How do I unsubscribe from the SPM or FSL email list?